PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA17G00124
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 283aa    MW: 32526.4 Da    PI: 5.4651
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA17G00124genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l   +  +G  +W++ ++  g+ R++k+c++rw +yl
       AA17G00124 14 KGPWTQEEDQILMSFIFNHGHSNWRALPKQAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP

2Myb_DNA-binding49.69.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
       AA17G00124  67 RGNFTIEEEDTIINLHNLLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129414.765961IPR017930Myb domain
SuperFamilySSF466891.76E-2910108IPR009057Homeodomain-like
SMARTSM007179.5E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
CDDcd001671.49E-81661No hitNo description
PROSITE profilePS5129424.2762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2665116IPR009057Homeodomain-like
SMARTSM007179.1E-1366114IPR001005SANT/Myb domain
PfamPF002491.3E-1467112IPR001005SANT/Myb domain
CDDcd001677.36E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTQE EDQILMSFIF NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY  60
LKPDIKRGNF TIEEEDTIIN LHNLLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLQDYQ  120
PTKPKIINKK KSTKPKSEKN ETKLTNSSNP STYNPTSPSM SEVSSVTLKS HEGSNSNETY  180
MEMKSRNVTS SEQDSCSFEN FGVDIDESFW KEALYNQEDQ EQNQTLLNLE DGVEDIQGEI  240
QYLLTSVDSE NFGLSLDNDM EFWFDVFART GGEQEQILGD LMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406061.11e-133hypothetical protein EUTSA_v10022110mg
TrEMBLA0A087HDI11e-134A0A087HDI1_ARAAL; Uncharacterized protein
STRINGfgenesh2_kg.3__2539__AT3G23250.11e-131(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-113myb domain protein 15